source: src/main/java/agents/org/apache/commons/math/linear/Array2DRowRealMatrix.java

Last change on this file was 1, checked in by Wouter Pasman, 7 years ago

Initial import : Genius 9.0.0
File size: 22.1 KB
Line 
1/*
2 * Licensed to the Apache Software Foundation (ASF) under one or more
3 * contributor license agreements. See the NOTICE file distributed with
4 * this work for additional information regarding copyright ownership.
5 * The ASF licenses this file to You under the Apache License, Version 2.0
6 * (the "License"); you may not use this file except in compliance with
7 * the License. You may obtain a copy of the License at
8 *
9 * http://www.apache.org/licenses/LICENSE-2.0
10 *
11 * Unless required by applicable law or agreed to in writing, software
12 * distributed under the License is distributed on an "AS IS" BASIS,
13 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14 * See the License for the specific language governing permissions and
15 * limitations under the License.
16 */
17
18package agents.org.apache.commons.math.linear;
19
20import java.io.Serializable;
21
22import agents.org.apache.commons.math.MathRuntimeException;
23import agents.org.apache.commons.math.exception.util.LocalizedFormats;
24import agents.org.apache.commons.math.linear.MatrixVisitorException;
25
26/**
27 * Implementation of RealMatrix using a double[][] array to store entries and
28 * <a href="http://www.math.gatech.edu/~bourbaki/math2601/Web-notes/2num.pdf">
29 * LU decomposition</a> to support linear system
30 * solution and inverse.
31 * <p>
32 * The LU decomposition is performed as needed, to support the following operations: <ul>
33 * <li>solve</li>
34 * <li>isSingular</li>
35 * <li>getDeterminant</li>
36 * <li>inverse</li> </ul></p>
37 * <p>
38 * <strong>Usage notes</strong>:<br>
39 * <ul><li>
40 * The LU decomposition is cached and reused on subsequent calls.
41 * If data are modified via references to the underlying array obtained using
42 * <code>getDataRef()</code>, then the stored LU decomposition will not be
43 * discarded. In this case, you need to explicitly invoke
44 * <code>LUDecompose()</code> to recompute the decomposition
45 * before using any of the methods above.</li>
46 * <li>
47 * As specified in the {@link RealMatrix} interface, matrix element indexing
48 * is 0-based -- e.g., <code>getEntry(0, 0)</code>
49 * returns the element in the first row, first column of the matrix.</li></ul>
50 * </p>
51 *
52 * @version $Revision: 1073158 $ $Date: 2011-02-21 22:46:52 +0100 (lun. 21 févr. 2011) $
53 */
54public class Array2DRowRealMatrix extends AbstractRealMatrix implements Serializable {
55
56 /** Serializable version identifier */
57 private static final long serialVersionUID = -1067294169172445528L;
58
59 /** Entries of the matrix */
60 protected double data[][];
61
62 /**
63 * Creates a matrix with no data
64 */
65 public Array2DRowRealMatrix() {
66 }
67
68 /**
69 * Create a new RealMatrix with the supplied row and column dimensions.
70 *
71 * @param rowDimension the number of rows in the new matrix
72 * @param columnDimension the number of columns in the new matrix
73 * @throws IllegalArgumentException if row or column dimension is not
74 * positive
75 */
76 public Array2DRowRealMatrix(final int rowDimension, final int columnDimension)
77 throws IllegalArgumentException {
78 super(rowDimension, columnDimension);
79 data = new double[rowDimension][columnDimension];
80 }
81
82 /**
83 * Create a new RealMatrix using the input array as the underlying
84 * data array.
85 * <p>The input array is copied, not referenced. This constructor has
86 * the same effect as calling {@link #Array2DRowRealMatrix(double[][], boolean)}
87 * with the second argument set to <code>true</code>.</p>
88 *
89 * @param d data for new matrix
90 * @throws IllegalArgumentException if <code>d</code> is not rectangular
91 * (not all rows have the same length) or empty
92 * @throws NullPointerException if <code>d</code> is null
93 * @see #Array2DRowRealMatrix(double[][], boolean)
94 */
95 public Array2DRowRealMatrix(final double[][] d)
96 throws IllegalArgumentException, NullPointerException {
97 copyIn(d);
98 }
99
100 /**
101 * Create a new RealMatrix using the input array as the underlying
102 * data array.
103 * <p>If an array is built specially in order to be embedded in a
104 * RealMatrix and not used directly, the <code>copyArray</code> may be
105 * set to <code>false</code. This will prevent the copying and improve
106 * performance as no new array will be built and no data will be copied.</p>
107 * @param d data for new matrix
108 * @param copyArray if true, the input array will be copied, otherwise
109 * it will be referenced
110 * @throws IllegalArgumentException if <code>d</code> is not rectangular
111 * (not all rows have the same length) or empty
112 * @throws NullPointerException if <code>d</code> is null
113 * @see #Array2DRowRealMatrix(double[][])
114 */
115 public Array2DRowRealMatrix(final double[][] d, final boolean copyArray)
116 throws IllegalArgumentException, NullPointerException {
117 if (copyArray) {
118 copyIn(d);
119 } else {
120 if (d == null) {
121 throw new NullPointerException();
122 }
123 final int nRows = d.length;
124 if (nRows == 0) {
125 throw MathRuntimeException.createIllegalArgumentException(
126 LocalizedFormats.AT_LEAST_ONE_ROW);
127 }
128 final int nCols = d[0].length;
129 if (nCols == 0) {
130 throw MathRuntimeException.createIllegalArgumentException(
131 LocalizedFormats.AT_LEAST_ONE_COLUMN);
132 }
133 for (int r = 1; r < nRows; r++) {
134 if (d[r].length != nCols) {
135 throw MathRuntimeException.createIllegalArgumentException(
136 LocalizedFormats.DIFFERENT_ROWS_LENGTHS, nCols, d[r].length);
137 }
138 }
139 data = d;
140 }
141 }
142
143 /**
144 * Create a new (column) RealMatrix using <code>v</code> as the
145 * data for the unique column of the <code>v.length x 1</code> matrix
146 * created.
147 * <p>The input array is copied, not referenced.</p>
148 *
149 * @param v column vector holding data for new matrix
150 */
151 public Array2DRowRealMatrix(final double[] v) {
152 final int nRows = v.length;
153 data = new double[nRows][1];
154 for (int row = 0; row < nRows; row++) {
155 data[row][0] = v[row];
156 }
157 }
158
159 /** {@inheritDoc} */
160 @Override
161 public RealMatrix createMatrix(final int rowDimension, final int columnDimension)
162 throws IllegalArgumentException {
163 return new Array2DRowRealMatrix(rowDimension, columnDimension);
164 }
165
166 /** {@inheritDoc} */
167 @Override
168 public RealMatrix copy() {
169 return new Array2DRowRealMatrix(copyOut(), false);
170 }
171
172 /** {@inheritDoc} */
173 @Override
174 public RealMatrix add(final RealMatrix m)
175 throws IllegalArgumentException {
176 try {
177 return add((Array2DRowRealMatrix) m);
178 } catch (ClassCastException cce) {
179 return super.add(m);
180 }
181 }
182
183 /**
184 * Compute the sum of this and <code>m</code>.
185 *
186 * @param m matrix to be added
187 * @return this + m
188 * @throws IllegalArgumentException if m is not the same size as this
189 */
190 public Array2DRowRealMatrix add(final Array2DRowRealMatrix m)
191 throws IllegalArgumentException {
192
193 // safety check
194 MatrixUtils.checkAdditionCompatible(this, m);
195
196 final int rowCount = getRowDimension();
197 final int columnCount = getColumnDimension();
198 final double[][] outData = new double[rowCount][columnCount];
199 for (int row = 0; row < rowCount; row++) {
200 final double[] dataRow = data[row];
201 final double[] mRow = m.data[row];
202 final double[] outDataRow = outData[row];
203 for (int col = 0; col < columnCount; col++) {
204 outDataRow[col] = dataRow[col] + mRow[col];
205 }
206 }
207
208 return new Array2DRowRealMatrix(outData, false);
209
210 }
211
212 /** {@inheritDoc} */
213 @Override
214 public RealMatrix subtract(final RealMatrix m)
215 throws IllegalArgumentException {
216 try {
217 return subtract((Array2DRowRealMatrix) m);
218 } catch (ClassCastException cce) {
219 return super.subtract(m);
220 }
221 }
222
223 /**
224 * Compute this minus <code>m</code>.
225 *
226 * @param m matrix to be subtracted
227 * @return this + m
228 * @throws IllegalArgumentException if m is not the same size as this
229 */
230 public Array2DRowRealMatrix subtract(final Array2DRowRealMatrix m)
231 throws IllegalArgumentException {
232
233 // safety check
234 MatrixUtils.checkSubtractionCompatible(this, m);
235
236 final int rowCount = getRowDimension();
237 final int columnCount = getColumnDimension();
238 final double[][] outData = new double[rowCount][columnCount];
239 for (int row = 0; row < rowCount; row++) {
240 final double[] dataRow = data[row];
241 final double[] mRow = m.data[row];
242 final double[] outDataRow = outData[row];
243 for (int col = 0; col < columnCount; col++) {
244 outDataRow[col] = dataRow[col] - mRow[col];
245 }
246 }
247
248 return new Array2DRowRealMatrix(outData, false);
249
250 }
251
252 /** {@inheritDoc} */
253 @Override
254 public RealMatrix multiply(final RealMatrix m)
255 throws IllegalArgumentException {
256 try {
257 return multiply((Array2DRowRealMatrix) m);
258 } catch (ClassCastException cce) {
259 return super.multiply(m);
260 }
261 }
262
263 /**
264 * Returns the result of postmultiplying this by <code>m</code>.
265 * @param m matrix to postmultiply by
266 * @return this*m
267 * @throws IllegalArgumentException
268 * if columnDimension(this) != rowDimension(m)
269 */
270 public Array2DRowRealMatrix multiply(final Array2DRowRealMatrix m)
271 throws IllegalArgumentException {
272
273 // safety check
274 MatrixUtils.checkMultiplicationCompatible(this, m);
275
276 final int nRows = this.getRowDimension();
277 final int nCols = m.getColumnDimension();
278 final int nSum = this.getColumnDimension();
279 final double[][] outData = new double[nRows][nCols];
280 for (int row = 0; row < nRows; row++) {
281 final double[] dataRow = data[row];
282 final double[] outDataRow = outData[row];
283 for (int col = 0; col < nCols; col++) {
284 double sum = 0;
285 for (int i = 0; i < nSum; i++) {
286 sum += dataRow[i] * m.data[i][col];
287 }
288 outDataRow[col] = sum;
289 }
290 }
291
292 return new Array2DRowRealMatrix(outData, false);
293
294 }
295
296 /** {@inheritDoc} */
297 @Override
298 public double[][] getData() {
299 return copyOut();
300 }
301
302 /**
303 * Returns a reference to the underlying data array.
304 * <p>
305 * Does <strong>not</strong> make a fresh copy of the underlying data.</p>
306 *
307 * @return 2-dimensional array of entries
308 */
309 public double[][] getDataRef() {
310 return data;
311 }
312
313 /** {@inheritDoc} */
314 @Override
315 public void setSubMatrix(final double[][] subMatrix, final int row, final int column)
316 throws MatrixIndexException {
317 if (data == null) {
318 if (row > 0) {
319 throw MathRuntimeException.createIllegalStateException(
320 LocalizedFormats.FIRST_ROWS_NOT_INITIALIZED_YET, row);
321 }
322 if (column > 0) {
323 throw MathRuntimeException.createIllegalStateException(
324 LocalizedFormats.FIRST_COLUMNS_NOT_INITIALIZED_YET, column);
325 }
326 final int nRows = subMatrix.length;
327 if (nRows == 0) {
328 throw MathRuntimeException.createIllegalArgumentException(
329 LocalizedFormats.AT_LEAST_ONE_ROW);
330 }
331
332 final int nCols = subMatrix[0].length;
333 if (nCols == 0) {
334 throw MathRuntimeException.createIllegalArgumentException(
335 LocalizedFormats.AT_LEAST_ONE_COLUMN);
336 }
337 data = new double[subMatrix.length][nCols];
338 for (int i = 0; i < data.length; ++i) {
339 if (subMatrix[i].length != nCols) {
340 throw MathRuntimeException.createIllegalArgumentException(
341 LocalizedFormats.DIFFERENT_ROWS_LENGTHS, nCols, subMatrix[i].length);
342 }
343 System.arraycopy(subMatrix[i], 0, data[i + row], column, nCols);
344 }
345 } else {
346 super.setSubMatrix(subMatrix, row, column);
347 }
348
349 }
350
351 /** {@inheritDoc} */
352 @Override
353 public double getEntry(final int row, final int column)
354 throws MatrixIndexException {
355 try {
356 return data[row][column];
357 } catch (ArrayIndexOutOfBoundsException e) {
358 throw new MatrixIndexException(
359 LocalizedFormats.NO_SUCH_MATRIX_ENTRY, row, column, getRowDimension(), getColumnDimension());
360 }
361 }
362
363 /** {@inheritDoc} */
364 @Override
365 public void setEntry(final int row, final int column, final double value)
366 throws MatrixIndexException {
367 try {
368 data[row][column] = value;
369 } catch (ArrayIndexOutOfBoundsException e) {
370 throw new MatrixIndexException(
371 LocalizedFormats.NO_SUCH_MATRIX_ENTRY, row, column, getRowDimension(), getColumnDimension());
372 }
373 }
374
375 /** {@inheritDoc} */
376 @Override
377 public void addToEntry(final int row, final int column, final double increment)
378 throws MatrixIndexException {
379 try {
380 data[row][column] += increment;
381 } catch (ArrayIndexOutOfBoundsException e) {
382 throw new MatrixIndexException(
383 LocalizedFormats.NO_SUCH_MATRIX_ENTRY, row, column, getRowDimension(), getColumnDimension());
384 }
385 }
386
387 /** {@inheritDoc} */
388 @Override
389 public void multiplyEntry(final int row, final int column, final double factor)
390 throws MatrixIndexException {
391 try {
392 data[row][column] *= factor;
393 } catch (ArrayIndexOutOfBoundsException e) {
394 throw new MatrixIndexException(
395 LocalizedFormats.NO_SUCH_MATRIX_ENTRY, row, column, getRowDimension(), getColumnDimension());
396 }
397 }
398
399 /** {@inheritDoc} */
400 @Override
401 public int getRowDimension() {
402 return (data == null) ? 0 : data.length;
403 }
404
405 /** {@inheritDoc} */
406 @Override
407 public int getColumnDimension() {
408 return ((data == null) || (data[0] == null)) ? 0 : data[0].length;
409 }
410
411 /** {@inheritDoc} */
412 @Override
413 public double[] operate(final double[] v)
414 throws IllegalArgumentException {
415 final int nRows = this.getRowDimension();
416 final int nCols = this.getColumnDimension();
417 if (v.length != nCols) {
418 throw MathRuntimeException.createIllegalArgumentException(
419 LocalizedFormats.VECTOR_LENGTH_MISMATCH, v.length, nCols);
420 }
421 final double[] out = new double[nRows];
422 for (int row = 0; row < nRows; row++) {
423 final double[] dataRow = data[row];
424 double sum = 0;
425 for (int i = 0; i < nCols; i++) {
426 sum += dataRow[i] * v[i];
427 }
428 out[row] = sum;
429 }
430 return out;
431 }
432
433 /** {@inheritDoc} */
434 @Override
435 public double[] preMultiply(final double[] v)
436 throws IllegalArgumentException {
437
438 final int nRows = getRowDimension();
439 final int nCols = getColumnDimension();
440 if (v.length != nRows) {
441 throw MathRuntimeException.createIllegalArgumentException(
442 LocalizedFormats.VECTOR_LENGTH_MISMATCH, v.length, nRows);
443 }
444
445 final double[] out = new double[nCols];
446 for (int col = 0; col < nCols; ++col) {
447 double sum = 0;
448 for (int i = 0; i < nRows; ++i) {
449 sum += data[i][col] * v[i];
450 }
451 out[col] = sum;
452 }
453
454 return out;
455
456 }
457
458 /** {@inheritDoc} */
459 @Override
460 public double walkInRowOrder(final RealMatrixChangingVisitor visitor)
461 throws MatrixVisitorException {
462 final int rows = getRowDimension();
463 final int columns = getColumnDimension();
464 visitor.start(rows, columns, 0, rows - 1, 0, columns - 1);
465 for (int i = 0; i < rows; ++i) {
466 final double[] rowI = data[i];
467 for (int j = 0; j < columns; ++j) {
468 rowI[j] = visitor.visit(i, j, rowI[j]);
469 }
470 }
471 return visitor.end();
472 }
473
474 /** {@inheritDoc} */
475 @Override
476 public double walkInRowOrder(final RealMatrixPreservingVisitor visitor)
477 throws MatrixVisitorException {
478 final int rows = getRowDimension();
479 final int columns = getColumnDimension();
480 visitor.start(rows, columns, 0, rows - 1, 0, columns - 1);
481 for (int i = 0; i < rows; ++i) {
482 final double[] rowI = data[i];
483 for (int j = 0; j < columns; ++j) {
484 visitor.visit(i, j, rowI[j]);
485 }
486 }
487 return visitor.end();
488 }
489
490 /** {@inheritDoc} */
491 @Override
492 public double walkInRowOrder(final RealMatrixChangingVisitor visitor,
493 final int startRow, final int endRow,
494 final int startColumn, final int endColumn)
495 throws MatrixIndexException, MatrixVisitorException {
496 MatrixUtils.checkSubMatrixIndex(this, startRow, endRow, startColumn, endColumn);
497 visitor.start(getRowDimension(), getColumnDimension(),
498 startRow, endRow, startColumn, endColumn);
499 for (int i = startRow; i <= endRow; ++i) {
500 final double[] rowI = data[i];
501 for (int j = startColumn; j <= endColumn; ++j) {
502 rowI[j] = visitor.visit(i, j, rowI[j]);
503 }
504 }
505 return visitor.end();
506 }
507
508 /** {@inheritDoc} */
509 @Override
510 public double walkInRowOrder(final RealMatrixPreservingVisitor visitor,
511 final int startRow, final int endRow,
512 final int startColumn, final int endColumn)
513 throws MatrixIndexException, MatrixVisitorException {
514 MatrixUtils.checkSubMatrixIndex(this, startRow, endRow, startColumn, endColumn);
515 visitor.start(getRowDimension(), getColumnDimension(),
516 startRow, endRow, startColumn, endColumn);
517 for (int i = startRow; i <= endRow; ++i) {
518 final double[] rowI = data[i];
519 for (int j = startColumn; j <= endColumn; ++j) {
520 visitor.visit(i, j, rowI[j]);
521 }
522 }
523 return visitor.end();
524 }
525
526 /** {@inheritDoc} */
527 @Override
528 public double walkInColumnOrder(final RealMatrixChangingVisitor visitor)
529 throws MatrixVisitorException {
530 final int rows = getRowDimension();
531 final int columns = getColumnDimension();
532 visitor.start(rows, columns, 0, rows - 1, 0, columns - 1);
533 for (int j = 0; j < columns; ++j) {
534 for (int i = 0; i < rows; ++i) {
535 final double[] rowI = data[i];
536 rowI[j] = visitor.visit(i, j, rowI[j]);
537 }
538 }
539 return visitor.end();
540 }
541
542 /** {@inheritDoc} */
543 @Override
544 public double walkInColumnOrder(final RealMatrixPreservingVisitor visitor)
545 throws MatrixVisitorException {
546 final int rows = getRowDimension();
547 final int columns = getColumnDimension();
548 visitor.start(rows, columns, 0, rows - 1, 0, columns - 1);
549 for (int j = 0; j < columns; ++j) {
550 for (int i = 0; i < rows; ++i) {
551 visitor.visit(i, j, data[i][j]);
552 }
553 }
554 return visitor.end();
555 }
556
557 /** {@inheritDoc} */
558 @Override
559 public double walkInColumnOrder(final RealMatrixChangingVisitor visitor,
560 final int startRow, final int endRow,
561 final int startColumn, final int endColumn)
562 throws MatrixIndexException, MatrixVisitorException {
563 MatrixUtils.checkSubMatrixIndex(this, startRow, endRow, startColumn, endColumn);
564 visitor.start(getRowDimension(), getColumnDimension(),
565 startRow, endRow, startColumn, endColumn);
566 for (int j = startColumn; j <= endColumn; ++j) {
567 for (int i = startRow; i <= endRow; ++i) {
568 final double[] rowI = data[i];
569 rowI[j] = visitor.visit(i, j, rowI[j]);
570 }
571 }
572 return visitor.end();
573 }
574
575 /** {@inheritDoc} */
576 @Override
577 public double walkInColumnOrder(final RealMatrixPreservingVisitor visitor,
578 final int startRow, final int endRow,
579 final int startColumn, final int endColumn)
580 throws MatrixIndexException, MatrixVisitorException {
581 MatrixUtils.checkSubMatrixIndex(this, startRow, endRow, startColumn, endColumn);
582 visitor.start(getRowDimension(), getColumnDimension(),
583 startRow, endRow, startColumn, endColumn);
584 for (int j = startColumn; j <= endColumn; ++j) {
585 for (int i = startRow; i <= endRow; ++i) {
586 visitor.visit(i, j, data[i][j]);
587 }
588 }
589 return visitor.end();
590 }
591
592 /**
593 * Returns a fresh copy of the underlying data array.
594 *
595 * @return a copy of the underlying data array.
596 */
597 private double[][] copyOut() {
598 final int nRows = this.getRowDimension();
599 final double[][] out = new double[nRows][this.getColumnDimension()];
600 // can't copy 2-d array in one shot, otherwise get row references
601 for (int i = 0; i < nRows; i++) {
602 System.arraycopy(data[i], 0, out[i], 0, data[i].length);
603 }
604 return out;
605 }
606
607 /**
608 * Replaces data with a fresh copy of the input array.
609 * <p>
610 * Verifies that the input array is rectangular and non-empty.</p>
611 *
612 * @param in data to copy in
613 * @throws IllegalArgumentException if input array is empty or not
614 * rectangular
615 * @throws NullPointerException if input array is null
616 */
617 private void copyIn(final double[][] in) {
618 setSubMatrix(in, 0, 0);
619 }
620
621}
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